Lab infectious disease dataset
Description:
Purpose is infections disease reference typing and surveilance. Includes all lab reporting and data are primarily generated by ESR.
Additional information:
Have_(encrypted)_NHI | Yes |
Personally identifiable (e.g. linked to NHI numbers) and longitudinal or aggregated (e.g. for planning, clinical research etc.)? | Yes - via NHI |
Volume of data (e.g. how many records) Since when? | ? |
Purpose and governance including ethics committee/patient consent mechanisms. Q: How do you get around ethics/privacy issues with your data sources? Esp. DHBs? | collect on behalf of MoH - just custodians. No link to other stakeholders or consumer groups. Data access: happens through DAP - ESR manages external data requests but MoH approves. Internal access list is applied |
Scope | National |
Does the data contain diagnoses and clinical outcomes? Does the data contain procedures, device information and medication for therapy? Does this data set have cost / price data? | Partly: Demographics, Diagnoses, suspected organism from Labs and other survey questions |
Presence of Data dictionary? Column headings in Excel or any kind of data model if residing in a relational database (e.g. Access, SQL Server, Oracle etc.) | Case definition available |
Linked (or linkable) to other datasets within your organisation or across the Sector | linkable but not linked |
How often does this data set get updated? Daily? Weekly? Monthly? Quarterly? Yearly? | Real time |
Indication of data quality (e.g. missing values, duplications, inconsistencies etc.). Q: Audits? How do you ensure the data is valid and correct? | reasonably good. |
Brief info about the systems and processes used to collect/manage data. Q: Where the data is collected, in what form, and accessibility? | Lab data comes in automatically through HL7 interface. Survey questions come from GPs. |
Data format, e.g., data structure, data types, and storage form (relational database, Excel, csv, etc.). | Data goes into RDBMS |
How well the data is structured, e.g. free text VS coded text VS pick-list (drop-down list) | all structured |